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Ecommerce → Accounting Automation

Shopify to Quickbooks integration. Migrate faster. Sync smarter. Close books in minutes.

Connect Shopify to QuickBooks. Automate orders, payouts, fees, tax, and inventory so you can reconcile without spreadsheets.


Works with your stack

Shopify logo QuickBooks Online logo

Eliminate manual data entry

Post sales, tax, discounts, fees, and shipping to the right accounts—automatically.

Keep inventory accurate

Sync stock levels across locations/channels and avoid oversells.

Close your books faster

Get reconciled payouts and clear visibility into margins—minus spreadsheet chaos.

Developer-friendly tools

Shopify CLI Dashboard with logs, device auth, and quick deploys.

Your workflow, automated

Order → Accounting

Automatically sync orders to QuickBooks/Xero with correct tax, tenders, discounts, and fees.

Real-time Inventory

Update inventory across every channel/location; manage bundles/kits confidently.

Pricing & Tax

Apply pricing rules and keep tax handling consistent and compliant.

Reporting & Restock

Track sales/margins by SKU or channel; trigger POs and low-stock alerts.

Set Up Shopify QuickBooks Integration in 5 Minutes

Follow these steps to connect Ecomigrator and automate your accounting — no coding required.

Live onboarding and setup call for Ecomigrator
Step 1: Free Onboarding & Setup (Highly Recommended) Book a quick 1:1 call—we’ll connect Shopify & QuickBooks for you, review settings, and run a sample sync together.
Book a Free Demo
Install Ecomigrator
Step 2: Connect Your Shopify Store → Click “Install Ecomigrator” → Follow the installation steps.
Connect QuickBooks Online
Step 3: Link QuickBooks Online Click “Connect QuickBooks” → Sign in with Intuit → Authorize access.
Set preferences
Step 4: Set Preferences → Click the cogs button → Choose posting method → Set accounting preferences.
Test and go live
Step 5: Test & Go Live Import orders → Post orders → Verify in QuickBooks → Click Realtime in settings*

Done! Your orders, inventory, and payouts now sync in real-time. Start free trial →

*Realtime requires the Master plan!

99% Customer satisfaction
16+ Years of experience

Teams like yours save hours every week

“Banjo Brothers chose Ecomigrator as our preffered solution to import orders from our Shopify Store into Quickbooks Online. The implementation process was seamless and the Ecomigrator staff was resposive, forward-thinking and detailed oriented. The interface and process for bringing in orders is simple and efficient. Were not only excited about the order implentation process, we're confident this app will be a key to simplifying our reconcilliation processs and improving our inventory management.”

— Banjo Brothers

Ready to migrate and automate?